PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5385_f_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 316aa    MW: 36518.7 Da    PI: 9.4629
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5385_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.6e-0690113226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    k  lC ff   G+C+ G +CkF+H+
  Neem_5385_f_3  90 KSILCEFFKV-GQCQKGFKCKFSHD 113
                    6779**9999.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-488114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83188115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-688113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-490114IPR000571Zinc finger, CCCH-type
SMARTSM003563.3139175IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.967143176IPR000571Zinc finger, CCCH-type
PfamPF165437.5E-18196275IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQN LKQSVQPKPD PTKVSVKKKK  60
EEEKAREKEL NDLFKIAVTQ PKVPVGVDPK SILCEFFKVG QCQKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DQERKTTMNF WEVCKYFLEA VEKKQYGWFW DCPNGGKDCH YRHALPPGYV  180
LKSQMKALLE EESENIAIED EIEDQRAKVK TSTPMTPELF MQWKKKKMEE REAGLAAQRA  240
DRVKNDRMSG RELFLLDASL FVDDAEAYEK YQRQEEPESS EQKGKGEPAT AGPSTSTEFQ  300
SIKTCPVRAR SYDIIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207952.11e-170PREDICTED: zinc finger CCCH domain-containing protein 21
SwissprotQ0JHZ21e-161C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLA0A0D2MFU71e-169A0A0D2MFU7_G
STRINGOB01G45080.11e-160(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48742333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-138C3H family protein